PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G082500.1
Common NamePHAVU_010G082500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 122aa    MW: 13290.5 Da    PI: 8.7691
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G082500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC101.18e-322210419100
               NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                         h+lPlari ki+k + edvkmis e+P+++skacelfi elt rsw+ a + kr+tl+k d++++v  tdifdfl+  v +++
  Phvul.010G082500.1  22 HSLPLARIMKIMKkSREDVKMISGESPIIFSKACELFIQELTRRSWIIAIQGKRKTLHKEDLTSVVIATDIFDFLITLVSNSD 104
                         99**********72569***********************************************************9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.59E-251696IPR009072Histone-fold
PfamPF008083.3E-192387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.4E-2824101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MRQAGAYSGL LCGGISGRTG PHSLPLARIM KIMKKSREDV KMISGESPII FSKACELFIQ  60
ELTRRSWIIA IQGKRKTLHK EDLTSVVIAT DIFDFLITLV SNSDSHALGA TTTILEVETI  120
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-242210040117HapE
4g92_C2e-242210040117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-138AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134863.12e-84hypothetical protein PHAVU_010G082500g
SwissprotQ9FMV59e-29NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
SwissprotQ9SMP07e-29NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
SwissprotQ9ZVL34e-29NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLV7AML52e-84V7AML5_PHAVU; Uncharacterized protein
STRINGGLYMA12G34510.15e-73(Glycine max)
STRINGGLYMA13G35980.15e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-30nuclear factor Y, subunit C3